Camera research

This page contains the metagenomic software pipeline RAMMCAP (Rapid analysis of Multiple Metagenomes with Clustering and Annotation Pipeline) and some pre-calculated results of metagenomic data with this pipeline.

Download the RAMMCAP software (~800MB),

Here is the updated version of RAMMCAP. Please see page:rammcap_20130510.html.

Please read the RAMMCAP user's guide

Annotation of the GOS data based on Pfam, Tigrfam, and COG is available Here.

Clusters of the GOS ORFs, along with the precalculated of large clusters is available Here.

The clustering and annotation of the Nine Biomes sequences is available here

Calculations of other datasets in the future will be added to this page.

The RAMMCAP software will be under further development, please come back later for updated release.

Reference:
Analysis and comparison of very large metagenomes with fast clustering and functional annotation. Weizhong Li. BMC Bioinformatics 2009, 10:359 doi:10.1186/1471-2105-10-359. Open access

Contact: Weizhong Li, liwz_@_sdsc.edu