function annotation (PFAM)

This program performs function annotation by using HMMER 3.0 program on PFAM database.
(1) Protein FASTA file (required)
(2) Email address (optional)
(3) Parameters (optional)
Outputs: the following four files
(1) README.txt: description of the four output files
(2) output.1: Table of hmmer hits
(3) output.2: Table of GO mapping
(4) output.3: Table of EC mapping
Usage of web server:
(1) Select the protein fasta file in user's local computer. (required)
(2) Fill in user's email adress. (optional)
(3) Fill in parameters. (optional, modifiy it according to user's requirement)
(4) Click "Submit" button. (required)
Sequence file to upload (required):
Email (optional):
show description
-E e-value cutoff for prediction 

you want try, which offers some subset of the tools.

Sequence file to upload (required): input.fasta
Email (optional):
Parameters -E 0.001
show description
-E e-value cutoff for prediction 
Show an example
Program/Database References
1."Profile hidden Markov models", S. R. Eddy Bioinformatics (1998) 14(9):755-763.
2. "The Pfam protein families database", R. D. Finn, et al. Nucleic Acids Rese arch (2010) 38: D211-D222.
Program/Database Version
Program: hmmscan 3.1b2
Database: PFAM 31.0